iAOIFReaderHelper Class Reference

Helper class for reading Olympus image files (.oif). Adapted from FluoRenderer code. More...

#include <iAOIFReader.h>

Collaboration diagram for iAOIFReaderHelper:

Public Types
using	ResultImgPtr = ResultImgType::Pointer
using	ResultImgType = itk::Image<unsigned short, 3>
using	TiffImgPtr = TiffImgType::Pointer
using	TiffImgType = itk::Image<unsigned short, 2>

Public Member Functions
	iAOIFReaderHelper ()
bool	GetBatch ()
int	GetBatchNum ()
int	GetChanNum ()
int	GetCurBatch ()
std::wstring	GetCurName (int t, int c)
int	GetCurTime ()
std::wstring	GetDataName ()
double	GetExcitationWavelength (int chan)
double	GetMaxValue ()
std::wstring	GetPathName ()
ResultImgPtr	GetResult (int chanIdx)
double	GetScalarScale ()
int	GetSliceNum ()
std::wstring	GetTimeId ()
int	GetTimeNum ()
int	GetXSize ()
double	GetXSpc ()
int	GetYSize ()
double	GetYSpc ()
double	GetZSpc ()
bool	IsSpcInfoValid ()
void	Load ()
int	LoadBatch (int index)
void	Preprocess ()
void	SetBatch (bool batch)
void	SetFile (std::string &file)
void	SetFile (std::wstring &file)
void	SetTimeId (std::wstring &id)

Protected Attributes
int	m_alignment
	padding alignment
std::wstring	m_id_string
	the path and file name used to read files
std::wstring	m_path_name
int	m_resample_type
	0: nearest neighbour; 1: linear
int	m_resize_type
	0: no resizing; 1: padding; 2: resampling
bool	m_batch
	3D Batch
std::vector< std::wstring >	m_batch_list
int	m_cur_batch

Detailed Description

Helper class for reading Olympus image files (.oif). Adapted from FluoRenderer code.

Member Typedef Documentation

ResultImgPtr

using iAOIFReaderHelper::ResultImgPtr = ResultImgType::Pointer

ResultImgType

using iAOIFReaderHelper::ResultImgType = itk::Image<unsigned short, 3>

TiffImgPtr

using iAOIFReaderHelper::TiffImgPtr = TiffImgType::Pointer

TiffImgType

using iAOIFReaderHelper::TiffImgType = itk::Image<unsigned short, 2>

Constructor & Destructor Documentation

iAOIFReaderHelper()

iAOIFReaderHelper::iAOIFReaderHelper

(

)

Member Function Documentation

GetBatch()

bool iAOIFReaderHelper::GetBatch ( )

inline

GetBatchNum()

int iAOIFReaderHelper::GetBatchNum ( )

inline

GetChanNum()

int iAOIFReaderHelper::GetChanNum ( )

inline

GetCurBatch()

int iAOIFReaderHelper::GetCurBatch ( )

inline

GetCurName()

std::wstring iAOIFReaderHelper::GetCurName	(	int	t,
		int	c )

GetCurTime()

int iAOIFReaderHelper::GetCurTime ( )

inline

GetDataName()

std::wstring iAOIFReaderHelper::GetDataName ( )

inline

GetExcitationWavelength()

double iAOIFReaderHelper::GetExcitationWavelength

(

int

chan

)

GetMaxValue()

double iAOIFReaderHelper::GetMaxValue ( )

inline

GetPathName()

std::wstring iAOIFReaderHelper::GetPathName ( )

inline

GetResult()

iAOIFReaderHelper::ResultImgPtr iAOIFReaderHelper::GetResult

(

int

chanIdx

)

GetScalarScale()

double iAOIFReaderHelper::GetScalarScale ( )

inline

GetSliceNum()

int iAOIFReaderHelper::GetSliceNum ( )

inline

GetTimeId()

std::wstring iAOIFReaderHelper::GetTimeId

(

)

GetTimeNum()

int iAOIFReaderHelper::GetTimeNum ( )

inline

GetXSize()

int iAOIFReaderHelper::GetXSize ( )

inline

GetXSpc()

double iAOIFReaderHelper::GetXSpc ( )

inline

GetYSize()

int iAOIFReaderHelper::GetYSize ( )

inline

GetYSpc()

double iAOIFReaderHelper::GetYSpc ( )

inline

GetZSpc()

double iAOIFReaderHelper::GetZSpc ( )

inline

IsSpcInfoValid()

bool iAOIFReaderHelper::IsSpcInfoValid ( )

inline

Load()

void iAOIFReaderHelper::Load

(

)

LoadBatch()

int iAOIFReaderHelper::LoadBatch

(

int

index

)

Preprocess()

void iAOIFReaderHelper::Preprocess

(

)

SetBatch()

void iAOIFReaderHelper::SetBatch

(

bool

batch

)

SetFile() [1/2]

void iAOIFReaderHelper::SetFile

(

std::string &

file

)

SetFile() [2/2]

void iAOIFReaderHelper::SetFile

(

std::wstring &

file

)

SetTimeId()

void iAOIFReaderHelper::SetTimeId

(

std::wstring &

id

)

Member Data Documentation

m_alignment

int iAOIFReaderHelper::m_alignment

protected

padding alignment

m_batch

bool iAOIFReaderHelper::m_batch

protected

3D Batch

m_batch_list

std::vector<std::wstring> iAOIFReaderHelper::m_batch_list

protected

m_cur_batch

int iAOIFReaderHelper::m_cur_batch

protected

m_id_string

std::wstring iAOIFReaderHelper::m_id_string

protected

the path and file name used to read files

m_path_name

std::wstring iAOIFReaderHelper::m_path_name

protected

m_resample_type

int iAOIFReaderHelper::m_resample_type

protected

0: nearest neighbour; 1: linear

m_resize_type

int iAOIFReaderHelper::m_resize_type

protected

0: no resizing; 1: padding; 2: resampling

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The documentation for this class was generated from the following files:

• libs/io/iAOIFReader.h
• libs/io/iAOIFReader.cpp