iAMaskingLabelOverlapMeasuresImageFilter< TLabelImage > Class Template Reference

Computes overlap measures between the set same set of labels of pixels of two images. Background is assumed to be 0. Based on LabelOverlapMeasuresImageFilter. In addition, it filters out certain labels for the result. More...

#include <iAMaskingLabelOverlapMeasuresImageFilter.h>

Inheritance diagram for iAMaskingLabelOverlapMeasuresImageFilter< TLabelImage >:

Collaboration diagram for iAMaskingLabelOverlapMeasuresImageFilter< TLabelImage >:

Classes
class	LabelSetMeasures
	Metrics stored per label. More...

Public Types
typedef itk::SmartPointer< const Self >	ConstPointer
typedef TLabelImage::IndexType	IndexType
typedef TLabelImage::ConstPointer	LabelImageConstPointer
typedef TLabelImage::Pointer	LabelImagePointer
typedef TLabelImage	LabelImageType
	Image related typedefs. More...
typedef TLabelImage::PixelType	LabelType
typedef MapType::const_iterator	MapConstIterator
typedef MapType::iterator	MapIterator
typedef itksys::hash_map< LabelType, LabelSetMeasures >	MapType
	Type of the map used to store data per label. More...
typedef itk::SmartPointer< Self >	Pointer
typedef itk::NumericTraits< LabelType >::RealType	RealType
	Type to use for computations. More...
typedef TLabelImage::RegionType	RegionType
typedef iAMaskingLabelOverlapMeasuresImageFilter	Self
	Standard Self typedef. More...
typedef TLabelImage::SizeType	SizeType
typedef itk::ImageToImageFilter< TLabelImage, TLabelImage >	Superclass

Public Member Functions
RealType	GetDiceCoefficient () const
RealType	GetDiceCoefficient (LabelType label) const
RealType	GetFalseNegativeError () const
RealType	GetFalseNegativeError (LabelType) const
RealType	GetFalsePositiveError () const
RealType	GetFalsePositiveError (LabelType) const
RealType	GetJaccardCoefficient () const
	alternative names More...
RealType	GetJaccardCoefficient (LabelType label) const
MapType	GetLabelSetMeasures ()
	Get the label set measures. More...
RealType	GetMeanOverlap () const
RealType	GetMeanOverlap (LabelType) const
const LabelImageType *	GetSourceImage (void)
	Get the source image. More...
const LabelImageType *	GetTargetImage (void)
	Get the target image. More...
RealType	GetTargetOverlap (LabelType) const
	measures over individual labels More...
RealType	GetTotalOverlap () const
	tric overlap measures More...
RealType	GetUnionOverlap () const
RealType	GetUnionOverlap (LabelType) const
RealType	GetVolumeSimilarity () const
RealType	GetVolumeSimilarity (LabelType) const
std::set< size_t > const &	IgnoredIndices ()
	itkNewMacro (Self)
	Method for creation through the object factory. More...
	itkStaticConstMacro (ImageDimension, unsigned int, TLabelImage::ImageDimension)
	Image related typedefs. More...
	itkTypeMacro (iAMaskingLabelOverlapMeasuresImageFilter, ImageToImageFilter)
	Runtime information support. More...
void	SetIgnoredIndices (std::set< size_t > const &v)
void	SetIgnoredLabel (LabelType label)
void	SetSourceImage (const LabelImageType *image)
	Set the source image. More...
void	SetTargetImage (const LabelImageType *image)
	Set the target image. More...

Protected Member Functions
void	AfterThreadedGenerateData () override
void	AllocateOutputs () override
	Pass the input through unmodified. More...
void	BeforeThreadedGenerateData () override
void	EnlargeOutputRequestedRegion (itk::DataObject *data) override
	iAMaskingLabelOverlapMeasuresImageFilter ()
void	PrintSelf (std::ostream &os, itk::Indent indent) const override
void	ThreadedGenerateData (const RegionType &, itk::ThreadIdType) override
	Multi-thread version GenerateData. More...
	~iAMaskingLabelOverlapMeasuresImageFilter ()

Detailed Description

template<typename TLabelImage>
class iAMaskingLabelOverlapMeasuresImageFilter< TLabelImage >

Computes overlap measures between the set same set of labels of pixels of two images. Background is assumed to be 0. Based on LabelOverlapMeasuresImageFilter. In addition, it filters out certain labels for the result.

Author

Nicholas J. Tustison

See also

iAMaskingLabelOverlapMeasuresImageFilter

Member Typedef Documentation

ConstPointer

template<typename TLabelImage >

typedef itk::SmartPointer<const Self> iAMaskingLabelOverlapMeasuresImageFilter< TLabelImage >::ConstPointer

IndexType

template<typename TLabelImage >

typedef TLabelImage::IndexType iAMaskingLabelOverlapMeasuresImageFilter< TLabelImage >::IndexType

LabelImageConstPointer

template<typename TLabelImage >

typedef TLabelImage::ConstPointer iAMaskingLabelOverlapMeasuresImageFilter< TLabelImage >::LabelImageConstPointer

LabelImagePointer

template<typename TLabelImage >

typedef TLabelImage::Pointer iAMaskingLabelOverlapMeasuresImageFilter< TLabelImage >::LabelImagePointer

LabelImageType

template<typename TLabelImage >

typedef TLabelImage iAMaskingLabelOverlapMeasuresImageFilter< TLabelImage >::LabelImageType

Image related typedefs.

LabelType

template<typename TLabelImage >

typedef TLabelImage::PixelType iAMaskingLabelOverlapMeasuresImageFilter< TLabelImage >::LabelType

MapConstIterator

template<typename TLabelImage >

typedef MapType::const_iterator iAMaskingLabelOverlapMeasuresImageFilter< TLabelImage >::MapConstIterator

MapIterator

template<typename TLabelImage >

typedef MapType::iterator iAMaskingLabelOverlapMeasuresImageFilter< TLabelImage >::MapIterator

MapType

template<typename TLabelImage >

typedef itksys::hash_map<LabelType, LabelSetMeasures> iAMaskingLabelOverlapMeasuresImageFilter< TLabelImage >::MapType

Type of the map used to store data per label.

Pointer

template<typename TLabelImage >

typedef itk::SmartPointer<Self> iAMaskingLabelOverlapMeasuresImageFilter< TLabelImage >::Pointer

RealType

template<typename TLabelImage >

typedef itk::NumericTraits<LabelType>::RealType iAMaskingLabelOverlapMeasuresImageFilter< TLabelImage >::RealType

Type to use for computations.

RegionType

template<typename TLabelImage >

typedef TLabelImage::RegionType iAMaskingLabelOverlapMeasuresImageFilter< TLabelImage >::RegionType

Self

template<typename TLabelImage >

typedef iAMaskingLabelOverlapMeasuresImageFilter iAMaskingLabelOverlapMeasuresImageFilter< TLabelImage >::Self

Standard Self typedef.

SizeType

template<typename TLabelImage >

typedef TLabelImage::SizeType iAMaskingLabelOverlapMeasuresImageFilter< TLabelImage >::SizeType

Superclass

template<typename TLabelImage >

typedef itk::ImageToImageFilter<TLabelImage, TLabelImage> iAMaskingLabelOverlapMeasuresImageFilter< TLabelImage >::Superclass

Constructor & Destructor Documentation

iAMaskingLabelOverlapMeasuresImageFilter()

template<typename TLabelImage >

iAMaskingLabelOverlapMeasuresImageFilter< TLabelImage >::iAMaskingLabelOverlapMeasuresImageFilter

protected

~iAMaskingLabelOverlapMeasuresImageFilter()

template<typename TLabelImage >

iAMaskingLabelOverlapMeasuresImageFilter< TLabelImage >::~iAMaskingLabelOverlapMeasuresImageFilter ( )

inlineprotected

Member Function Documentation

AfterThreadedGenerateData()

template<typename TLabelImage >

void iAMaskingLabelOverlapMeasuresImageFilter< TLabelImage >::AfterThreadedGenerateData

overrideprotected

AllocateOutputs()

template<typename TLabelImage >

void iAMaskingLabelOverlapMeasuresImageFilter< TLabelImage >::AllocateOutputs

overrideprotected

Pass the input through unmodified.

Do this by setting the output to the source this by setting the output to the source image in the AllocateOutputs() method.

BeforeThreadedGenerateData()

template<typename TLabelImage >

void iAMaskingLabelOverlapMeasuresImageFilter< TLabelImage >::BeforeThreadedGenerateData

overrideprotected

EnlargeOutputRequestedRegion()

template<typename TLabelImage >

void iAMaskingLabelOverlapMeasuresImageFilter< TLabelImage >::EnlargeOutputRequestedRegion ( itk::DataObject *  data )

overrideprotected

GetDiceCoefficient() [1/2]

template<typename TLabelImage >

RealType iAMaskingLabelOverlapMeasuresImageFilter< TLabelImage >::GetDiceCoefficient ( ) const

inline

GetDiceCoefficient() [2/2]

template<typename TLabelImage >

RealType iAMaskingLabelOverlapMeasuresImageFilter< TLabelImage >::GetDiceCoefficient ( LabelType  label ) const

inline

GetFalseNegativeError() [1/2]

template<typename TLabelImage >

iAMaskingLabelOverlapMeasuresImageFilter< TLabelImage >::RealType iAMaskingLabelOverlapMeasuresImageFilter< TLabelImage >::GetFalseNegativeError

GetFalseNegativeError() [2/2]

template<typename TLabelImage >

iAMaskingLabelOverlapMeasuresImageFilter< TLabelImage >::RealType iAMaskingLabelOverlapMeasuresImageFilter< TLabelImage >::GetFalseNegativeError

(

LabelType

label

)

const

GetFalsePositiveError() [1/2]

template<typename TLabelImage >

iAMaskingLabelOverlapMeasuresImageFilter< TLabelImage >::RealType iAMaskingLabelOverlapMeasuresImageFilter< TLabelImage >::GetFalsePositiveError

GetFalsePositiveError() [2/2]

template<typename TLabelImage >

iAMaskingLabelOverlapMeasuresImageFilter< TLabelImage >::RealType iAMaskingLabelOverlapMeasuresImageFilter< TLabelImage >::GetFalsePositiveError

(

LabelType

label

)

const

GetJaccardCoefficient() [1/2]

template<typename TLabelImage >

RealType iAMaskingLabelOverlapMeasuresImageFilter< TLabelImage >::GetJaccardCoefficient ( ) const

inline

alternative names

GetJaccardCoefficient() [2/2]

template<typename TLabelImage >

RealType iAMaskingLabelOverlapMeasuresImageFilter< TLabelImage >::GetJaccardCoefficient ( LabelType  label ) const

inline

GetLabelSetMeasures()

template<typename TLabelImage >

MapType iAMaskingLabelOverlapMeasuresImageFilter< TLabelImage >::GetLabelSetMeasures ( )

inline

Get the label set measures.

GetMeanOverlap() [1/2]

template<typename TLabelImage >

iAMaskingLabelOverlapMeasuresImageFilter< TLabelImage >::RealType iAMaskingLabelOverlapMeasuresImageFilter< TLabelImage >::GetMeanOverlap

GetMeanOverlap() [2/2]

template<typename TLabelImage >

iAMaskingLabelOverlapMeasuresImageFilter< TLabelImage >::RealType iAMaskingLabelOverlapMeasuresImageFilter< TLabelImage >::GetMeanOverlap

(

LabelType

label

)

const

GetSourceImage()

template<typename TLabelImage >

const LabelImageType* iAMaskingLabelOverlapMeasuresImageFilter< TLabelImage >::GetSourceImage ( void  )

inline

Get the source image.

GetTargetImage()

template<typename TLabelImage >

const LabelImageType* iAMaskingLabelOverlapMeasuresImageFilter< TLabelImage >::GetTargetImage ( void  )

inline

Get the target image.

GetTargetOverlap()

template<typename TLabelImage >

iAMaskingLabelOverlapMeasuresImageFilter< TLabelImage >::RealType iAMaskingLabelOverlapMeasuresImageFilter< TLabelImage >::GetTargetOverlap

(

LabelType

label

)

const

measures over individual labels

GetTotalOverlap()

template<typename TLabelImage >

iAMaskingLabelOverlapMeasuresImageFilter< TLabelImage >::RealType iAMaskingLabelOverlapMeasuresImageFilter< TLabelImage >::GetTotalOverlap

tric overlap measures

measures

measures over all labels

GetUnionOverlap() [1/2]

template<typename TLabelImage >

iAMaskingLabelOverlapMeasuresImageFilter< TLabelImage >::RealType iAMaskingLabelOverlapMeasuresImageFilter< TLabelImage >::GetUnionOverlap

GetUnionOverlap() [2/2]

template<typename TLabelImage >

iAMaskingLabelOverlapMeasuresImageFilter< TLabelImage >::RealType iAMaskingLabelOverlapMeasuresImageFilter< TLabelImage >::GetUnionOverlap

(

LabelType

label

)

const

GetVolumeSimilarity() [1/2]

template<typename TLabelImage >

iAMaskingLabelOverlapMeasuresImageFilter< TLabelImage >::RealType iAMaskingLabelOverlapMeasuresImageFilter< TLabelImage >::GetVolumeSimilarity

GetVolumeSimilarity() [2/2]

template<typename TLabelImage >

iAMaskingLabelOverlapMeasuresImageFilter< TLabelImage >::RealType iAMaskingLabelOverlapMeasuresImageFilter< TLabelImage >::GetVolumeSimilarity

(

LabelType

label

)

const

IgnoredIndices()

template<typename TLabelImage >

std::set<size_t> const& iAMaskingLabelOverlapMeasuresImageFilter< TLabelImage >::IgnoredIndices ( )

inline

itkNewMacro()

template<typename TLabelImage >

iAMaskingLabelOverlapMeasuresImageFilter< TLabelImage >::itkNewMacro

(

Self

)

Method for creation through the object factory.

itkStaticConstMacro()

template<typename TLabelImage >

iAMaskingLabelOverlapMeasuresImageFilter< TLabelImage >::itkStaticConstMacro	(	ImageDimension	,
		unsigned int	,
		TLabelImage::ImageDimension
	)

Image related typedefs.

itkTypeMacro()

template<typename TLabelImage >

iAMaskingLabelOverlapMeasuresImageFilter< TLabelImage >::itkTypeMacro	(	iAMaskingLabelOverlapMeasuresImageFilter< TLabelImage >	,
		ImageToImageFilter
	)

Runtime information support.

PrintSelf()

template<typename TLabelImage >

void iAMaskingLabelOverlapMeasuresImageFilter< TLabelImage >::PrintSelf ( std::ostream &  os, itk::Indent  indent  ) const

overrideprotected

SetIgnoredIndices()

template<typename TLabelImage >

void iAMaskingLabelOverlapMeasuresImageFilter< TLabelImage >::SetIgnoredIndices ( std::set< size_t > const &  v )

inline

SetIgnoredLabel()

template<typename TLabelImage >

void iAMaskingLabelOverlapMeasuresImageFilter< TLabelImage >::SetIgnoredLabel ( LabelType  label )

inline

SetSourceImage()

template<typename TLabelImage >

void iAMaskingLabelOverlapMeasuresImageFilter< TLabelImage >::SetSourceImage ( const LabelImageType *  image )

inline

Set the source image.

SetTargetImage()

template<typename TLabelImage >

void iAMaskingLabelOverlapMeasuresImageFilter< TLabelImage >::SetTargetImage ( const LabelImageType *  image )

inline

Set the target image.

ThreadedGenerateData()

template<typename TLabelImage >

void iAMaskingLabelOverlapMeasuresImageFilter< TLabelImage >::ThreadedGenerateData ( const RegionType &  outputRegionForThread, itk::ThreadIdType  threadId  )

overrideprotected

Multi-thread version GenerateData.

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The documentation for this class was generated from the following files:

• Toolkit/LabelVoting/iAMaskingLabelOverlapMeasuresImageFilter.h
• Toolkit/LabelVoting/iAMaskingLabelOverlapMeasuresImageFilter.hxx