iAToolsITK.h File Reference

#include "iAConsole.h"
#include "io/iAITKIO.h"
#include "open_iA_Core_export.h"
#include <itkCastImageFilter.h>
#include <itkChangeInformationImageFilter.h>
#include <itkImageFileReader.h>
#include <itkImageFileWriter.h>
#include <itkImageRegionConstIterator.h>
#include <itkImageRegionIterator.h>
#include <itkRescaleIntensityImageFilter.h>
#include <QString>

Include dependency graph for iAToolsITK.h:

This graph shows which files directly or indirectly include this file:

Functions
open_iA_Core_API iAITKIO::ImagePointer	allocateImage (iAITKIO::ImagePointer img)
open_iA_Core_API iAITKIO::ImagePointer	allocateImage (int const size[iAITKIO::m_DIM], double const spacing[iAITKIO::m_DIM], itk::ImageIOBase::IOComponentType type)
template<typename ResultPixelType >
iAITKIO::ImagePointer	castImageTo (iAITKIO::ImagePointer img)
template<typename TImage >
TImage::Pointer	createImage (typename TImage::Pointer otherImg)
template<typename TImage >
TImage::Pointer	createImage (typename TImage::SizeType size, typename TImage::SpacingType spacing)
template<typename TImage >
void	deepCopy (typename TImage::Pointer input, typename TImage::Pointer output)
	Source: http://itk.org/Wiki/ITK/Examples/Utilities/DeepCopy. More...
open_iA_Core_API iAITKIO::ImagePointer	extractImage (iAITKIO::ImagePointer inImg, size_t const indexArr[iAITKIO::m_DIM], size_t const sizeArr[iAITKIO::m_DIM])
	extract part of an image as a new file More...
open_iA_Core_API void	getStatistics (iAITKIO::ImagePointer img, double *min, double *max=nullptr, double *mean=nullptr, double *stddev=nullptr, double *variance=nullptr, double *sum=nullptr)
template<typename SourceImageType , typename ResultImageType >
iAITKIO::ImagePointer	internalCastImageTo (iAITKIO::ImagePointer img)
template<typename SourceImageType , typename ResultImageType >
iAITKIO::ImagePointer	internalRescaleImageTo (iAITKIO::ImagePointer img, double min, double max)
open_iA_Core_API itk::ImageIOBase::IOPixelType	itkPixelType (iAITKIO::ImagePointer image)
open_iA_Core_API itk::ImageIOBase::IOComponentType	itkScalarPixelType (iAITKIO::ImagePointer image)
template<typename ResultPixelType >
iAITKIO::ImagePointer	rescaleImageTo (iAITKIO::ImagePointer img, double min, double max)
template<typename T >
itk::Image< T, iAITKIO::m_DIM >::Pointer	setIndexOffsetToZero (typename itk::Image< T, iAITKIO::m_DIM >::Pointer inImg)
	set index offset of an image to (0,0,0) More...
open_iA_Core_API void	storeImage (iAITKIO::ImagePointer image, QString const &filename, bool useCompression)
template<typename TImage >
void	storeImage (TImage *image, QString const &filename, bool useCompression=true)
open_iA_Core_API double	itkPixel (iAITKIO::ImagePointer img, iAITKIO::ImageBaseType::IndexType idx)
open_iA_Core_API void	setITKPixel (iAITKIO::ImagePointer img, iAITKIO::ImageBaseType::IndexType idx, double value)

Function Documentation

allocateImage() [1/2]

open_iA_Core_API iAITKIO::ImagePointer allocateImage

(

iAITKIO::ImagePointer

img

)

allocateImage() [2/2]

open_iA_Core_API iAITKIO::ImagePointer allocateImage	(	int const	size[iAITKIO::m_DIM],
		double const	spacing[iAITKIO::m_DIM],
		itk::ImageIOBase::IOComponentType	type
	)

castImageTo()

template<typename ResultPixelType >

iAITKIO::ImagePointer castImageTo

(

iAITKIO::ImagePointer

img

)

createImage() [1/2]

template<typename TImage >

TImage::Pointer createImage

(

typename TImage::Pointer

otherImg

)

createImage() [2/2]

template<typename TImage >

TImage::Pointer createImage	(	typename TImage::SizeType	size,
		typename TImage::SpacingType	spacing
	)

deepCopy()

template<typename TImage >

void deepCopy	(	typename TImage::Pointer	input,
		typename TImage::Pointer	output
	)

Source: http://itk.org/Wiki/ITK/Examples/Utilities/DeepCopy.

extractImage()

open_iA_Core_API iAITKIO::ImagePointer extractImage	(	iAITKIO::ImagePointer	inImg,
		size_t const	indexArr[iAITKIO::m_DIM],
		size_t const	sizeArr[iAITKIO::m_DIM]
	)

extract part of an image as a new file

getStatistics()

open_iA_Core_API void getStatistics	(	iAITKIO::ImagePointer	img,
		double *	min,
		double *	max = nullptr,
		double *	mean = nullptr,
		double *	stddev = nullptr,
		double *	variance = nullptr,
		double *	sum = nullptr
	)

internalCastImageTo()

template<typename SourceImageType , typename ResultImageType >

iAITKIO::ImagePointer internalCastImageTo

(

iAITKIO::ImagePointer

img

)

internalRescaleImageTo()

template<typename SourceImageType , typename ResultImageType >

iAITKIO::ImagePointer internalRescaleImageTo	(	iAITKIO::ImagePointer	img,
		double	min,
		double	max
	)

itkPixel()

open_iA_Core_API double itkPixel	(	iAITKIO::ImagePointer	img,
		iAITKIO::ImageBaseType::IndexType	idx
	)

Generic access to pixels of any ITK image as double. Slow! If you need to access more than a few pixels, convert the whole image first (maybe using templates) and then access directly!

itkPixelType()

open_iA_Core_API itk::ImageIOBase::IOPixelType itkPixelType

(

iAITKIO::ImagePointer

image

)

itkScalarPixelType()

open_iA_Core_API itk::ImageIOBase::IOComponentType itkScalarPixelType

(

iAITKIO::ImagePointer

image

)

rescaleImageTo()

template<typename ResultPixelType >

iAITKIO::ImagePointer rescaleImageTo	(	iAITKIO::ImagePointer	img,
		double	min,
		double	max
	)

setIndexOffsetToZero()

template<typename T >

itk::Image<T, iAITKIO::m_DIM>::Pointer setIndexOffsetToZero

(

typename itk::Image< T, iAITKIO::m_DIM >::Pointer

inImg

)

set index offset of an image to (0,0,0)

setITKPixel()

open_iA_Core_API void setITKPixel	(	iAITKIO::ImagePointer	img,
		iAITKIO::ImageBaseType::IndexType	idx,
		double	value
	)

storeImage() [1/2]

open_iA_Core_API void storeImage	(	iAITKIO::ImagePointer	image,
		QString const &	filename,
		bool	useCompression
	)

storeImage() [2/2]

template<typename TImage >

void storeImage	(	TImage *	image,
		QString const &	filename,
		bool	useCompression = true
	)